PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g01330

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 311aa MW: 34803.3 Da PI: 9.9646

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g01330	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.5e-32	243	301	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ CA06g01330 243 SDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 301 69**********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.7E-17	195	240	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.0E-34	230	302	IPR003657	WRKY domain
PROSITE profile	PS50811	30.871	237	303	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-28	240	302	IPR003657	WRKY domain
SMART	SM00774	5.9E-40	242	302	IPR003657	WRKY domain
Pfam	PF03106	6.5E-28	244	301	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEEIEEANNA AVENCHRVMS LLSSGTHDRN QYMNLVRETG EAVNKFKKVV TLLNSTLGHA 60 RVRKSNKFKT PLPHNILVEN PNCKIDDQAK ALRSRPIDEN RVLEMGGTNV KCNLTLGSPS 120 LELSSNSRNP LNFGQQTHLP SYNYLQQQQQ QQRLFLLQQQ SFISSLSVDG SVANGSNFHL 180 VGASQSLDQS SFQHKRRCSE RGDEGSVKCG SSGKCHCSKK RKHRVKRSIK VPAVSNKLAD 240 IPSDEYSWRK YGQKPIKGSP HPRGYYKCSS MRGCPARKHV ERCLEDPSML IVTYEGEHNH 300 PRMASQSANT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	235	300	7	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-156	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576165.1	0.0	PREDICTED: probable WRKY transcription factor 21
Swissprot	Q9SR07	2e-91	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A2G2Z6M7	0.0	A0A2G2Z6M7_CAPAN; Putative WRKY transcription factor 21
STRING	Solyc06g008610.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3271	23	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	7e-81	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]