PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g02370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 219aa    MW: 25039.4 Da    PI: 9.8033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g02370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-114185347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+ E++l++ + +++  g+Wk+I+r+    +t+ q+ s+ qky
       CA06g02370 41 PWTKNEHQLFLMGLNRFKRGDWKSISRYYVVSKTPTQVASHAQKY 85
                     8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7613390IPR017930Myb domain
SuperFamilySSF466893.9E-153690IPR009057Homeodomain-like
SMARTSM007176.0E-83888IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.3E-153989IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.0E-84086IPR009057Homeodomain-like
PfamPF002493.4E-94185IPR001005SANT/Myb domain
CDDcd001675.36E-74186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MENSPENNDV FVVSDDDGHD QQHHLVQQED NHRPCRRRGT PWTKNEHQLF LMGLNRFKRG  60
DWKSISRYYV VSKTPTQVAS HAQKYFSRQD SKTPVERRRP SINDIQTVNL NLKTAPITTM  120
GATYLINNNR FAYNNNHQAA SSSIHFHHPS YTFSGPTFSN NFNENFEISH LGETSGSNSS  180
VMGKNNNNNN FNNLNRPVSP RPFLSTYLSS IRTNDPQV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577253.11e-162PREDICTED: transcription factor DIVARICATA-like isoform X1
TrEMBLA0A1U8H8411e-161A0A1U8H841_CAPAN; transcription factor DIVARICATA-like isoform X1
STRINGXP_009784767.12e-61(Nicotiana sylvestris)
STRINGPGSC0003DMT4000919802e-61(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-30MYB family protein