PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g02780

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 157aa MW: 17670 Da PI: 6.229

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g02780	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139	1.6e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasn+ k+l++l+ ++r da++slvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++ CA06g02780 7 PCASCKLLRRRCAKDCIFAPYFPPHDPHKFAIVHKVFGASNINKMLQELQIQQRADAVNSLVYEANARIRDPVYGCVGAISYLQNQISQLEMQLAVAQA 105 7**********************************************************************************************9998 PP DUF260 100 e 100 e CA06g02780 106 E 106 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.88	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MGVTSSPCAS CKLLRRRCAK DCIFAPYFPP HDPHKFAIVH KVFGASNINK MLQELQIQQR 60 ADAVNSLVYE ANARIRDPVY GCVGAISYLQ NQISQLEMQL AVAQAEILCI QMQNNQDSPS 120 PNYDNNNYNL PEIQIDNDNN NLQQYLRLLE IINNSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	4	108	8	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	4	108	8	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576751.1	8e-91	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	4e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2G2Z7A4	1e-110	A0A2G2Z7A4_CAPAN; LOB domain-containing protein 3
STRING	Solyc06g082310.2.1	4e-73	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-73	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]