PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g02870

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 252aa MW: 27724.8 Da PI: 8.4841

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g02870	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.2	1.8e-40	49	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkCa++C+++ yf ++p+kfa+vhk+FGasnv+kll ++ e++r da++slvyeA++r+rdPvyG++g i++l+qq+++l+ael+++++ CA06g02870 49 PCAACKLLRRKCAEECPFSLYFSPHEPQKFAVVHKVFGASNVSKLLMEVAENQRADAANSLVYEANVRLRDPVYGCMGAISSLNQQVQSLQAELNATRA 147 7**********************************************************************************************9998 PP DUF260 100 e 100 e CA06g02870 148 E 148 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.679	48	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-39	49	146	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
ERLVDEIVGK KLKIENIDAS SKLLHIQQIV GKRHHILEPS CTKLNTIIPC AACKLLRRKC 60 AEECPFSLYF SPHEPQKFAV VHKVFGASNV SKLLMEVAEN QRADAANSLV YEANVRLRDP 120 VYGCMGAISS LNQQVQSLQA ELNATRAEIL RYKYREATNS LVNIASTGVG AAVTLAELPX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXGSFYALSS TTATAAPRVS GCCCPLLFFA 240 FFTSAFVANS F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	49	152	11	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	49	152	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-103	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-103	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577243.1	1e-127	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	2e-67	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2G2Z7B6	1e-152	A0A2G2Z7B6_CAPAN; LOB domain-containing protein 15 (Fragment)
STRING	Solyc06g007390.2.1	1e-109	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	6e-70	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]