PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g03070
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 351aa    MW: 39426.4 Da    PI: 10.1248
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g03070genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536e-17117207199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k +++s+v +  +l lp +f+e+h    +++++++l +e+g ++e  +   +k+ +  l++GW+ F+ +++L++gD ++F+l++ ++f  +v ++r+
  CA06g03070 117 FIKSMVRSHVYSCFWLGLPTRFCEDHLP--KSTVDVVLVNEEGLEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALIFELIEPTKF--KVYIVRA 207
                 89************************53..3789****************..555544..************************987777..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-21109210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-24111212IPR015300DNA-binding pseudobarrel domain
CDDcd100175.43E-24115206No hitNo description
PfamPF023627.1E-15117207IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028117208IPR003340B3 DNA binding domain
SMARTSM010192.3E-23117208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
DLGILNISKN LSDLTKSEKK SDYKTELRRG RQKTYDVYMS EPRRSSRARN PVSSYRDEID  60
DIELPSLRKR SKFGSSWASY LARPLEEVKV ASFEERAQAL KSAEKLHSNL QSGNPYFIKS  120
MVRSHVYSCF WLGLPTRFCE DHLPKSTVDV VLVNEEGLEY EALFIGKRTG LSGGWRAFAL  180
DHKLDDGDAL IFELIEPTKF KVYIVRASHC SNEVDKSAAE KEESEAEEAS TNVTKKRKKT  240
SNKSKVSTVA KEEVYIVRAS HRSSGVDKSG AEKEESEAEE ASTNATKKRK KTSNKSKIPT  300
VAKEESEAEE ASTNATKKRK KTSNKSKVPT VAKEKEPVKA SATRRSTRRK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316320KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139570.0BT013957.1 Lycopersicon esculentum clone 132981R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575940.10.0PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_016575941.10.0PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_016575942.10.0PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_016575943.10.0PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_016575944.10.0PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_016575945.10.0PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_016575946.10.0PREDICTED: putative B3 domain-containing protein At5g58280
TrEMBLA0A2G2Z7D30.0A0A2G2Z7D3_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000531991e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-70B3 family protein