PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g03820
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 405aa    MW: 46787.6 Da    PI: 9.6555
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g03820genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.6e-141695999
                HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +k+g l +p  f+ ++ +g   ++++ ++  + g++W vkl  ++++    +++GW++F+++++L+ g +++F+++g+++f  +v++f++
  CA06g03820 16 PGFKNG-LKVPIGFL-KYlKGH--GHVEHVVLKRAGKKWLVKL--NGRR----FEDGWEKFAEEHDLQLGNMLIFRHEGDMDF--HVSIFDS 95
                556666.999****9.664544..778899999**********..8887....9*****************************..****997 PP
2B353.15.7e-17174262497
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +++s++l+++ l++p++fa+ +g+ +++  t++++d + rsW++ l     ++ +++++GW++F+ an LkegD ++F+ +  +++++++k++
  CA06g03820 174 CTMKSYNLAKSFLCVPRPFAQLNGLRNRRC-TIMIND-KQRSWTFSL--YSLGNITYIGGGWRNFCVANCLKEGDRLMFEIVI-NGEKPMLKFR 262
                 5789****************9999987664.676555.99*******..8888889************************765.5666788776 PP
3B350.83.1e-16303390597
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 +++s++l+++ l +p++fa+ +g+ +++  t++++de+g sW + l    +++++++++ W++F+ an LkegD ++F+ ++ +e+++ +k++
  CA06g03820 303 TMKSYYLSKNFLPFPNPFARLNGLRNRK-CTIMIRDEQG-SWMFSL--YSSGRHTYIGGRWRDFCAANCLKEGDRLMFEIVS-NEKKPILKFR 390
                 679*******************998655.59*****887.8*****..899999*************************888.5555777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-20397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-195102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.801796IPR003340B3 DNA binding domain
CDDcd100176.92E-14894No hitNo description
SMARTSM010191.3E-151096IPR003340B3 DNA binding domain
PfamPF023629.6E-111895IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-17169264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-17169262IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.167171264IPR003340B3 DNA binding domain
SMARTSM010191.2E-14172265IPR003340B3 DNA binding domain
PfamPF023622.6E-14173262IPR003340B3 DNA binding domain
CDDcd100175.58E-12176262No hitNo description
SuperFamilySSF1019362.94E-17296390IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-16296390IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-12298390No hitNo description
SMARTSM010192.9E-14299393IPR003340B3 DNA binding domain
PROSITE profilePS5086311.406299392IPR003340B3 DNA binding domain
PfamPF023623.1E-14302390IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEIPPKKPHF FKPILPGFKN GLKVPIGFLK YLKGHGHVEH VVLKRAGKKW LVKLNGRRFE  60
DGWEKFAEEH DLQLGNMLIF RHEGDMDFHV SIFDSTHCDT EYAEYLQEKK IGNFFYDVSN  120
FLCISIMNVE HSNLQIDYLD TSKIYPNVMS SNKAGPSIVE TVKGLHLSHS QFVCTMKSYN  180
LAKSFLCVPR PFAQLNGLRN RRCTIMINDK QRSWTFSLYS LGNITYIGGG WRNFCVANCL  240
KEGDRLMFEI VINGEKPMLK FRGKFFPLEV CISPANPCCY AKTHSIVFPN VEVVTNMPHF  300
ICTMKSYYLS KNFLPFPNPF ARLNGLRNRK CTIMIRDEQG SWMFSLYSSG RHTYIGGRWR  360
DFCAANCLKE GDRLMFEIVS NEKKPILKFR GKFLLNLFLS HSLK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577231.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A1U8H1690.0A0A1U8H169_CAPAN; B3 domain-containing protein REM10-like
STRINGXP_009792889.11e-133(Nicotiana sylvestris)
STRINGXP_009597618.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-50B3 family protein