 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA06g03880 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
| Family | B3 | ||||||||
| Protein Properties | Length: 110aa MW: 12655.6 Da PI: 8.6536 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 38.3 | 2.4e-12 | 1 | 50 | 36 | 87 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
++l+de+ rsW+v+l + r+ +t+GW++F +an +++gD+ F+l+++
CA06g03880 1 MILRDEKQRSWSVQL--GPVGPRFGITRGWRQFREANAVQVGDTYKFELIDN 50
579************..99999**************************9984 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50863 | 13.38 | 1 | 61 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 1.28E-13 | 1 | 60 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.86E-10 | 1 | 60 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 2.1E-13 | 1 | 59 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 1.3E-10 | 1 | 52 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 110 aa Download sequence Send to blast |
MILRDEKQRS WSVQLGPVGP RFGITRGWRQ FREANAVQVG DTYKFELIDN GTIPVAYFCC 60 EFMFTSLSFH SIPPTYTRFI FFFFATKAIR KCPFPDPANT GCFVHWDAL* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016501699.1 | 5e-32 | PREDICTED: B3 domain-containing protein REM1-like | ||||
| Refseq | XP_016549348.1 | 3e-31 | PREDICTED: B3 domain-containing protein REM17-like isoform X3 | ||||
| Refseq | XP_016563533.1 | 9e-32 | PREDICTED: B3 domain-containing protein REM10-like | ||||
| TrEMBL | A0A2G2Z7M3 | 2e-35 | A0A2G2Z7M3_CAPAN; Uncharacterized protein | ||||
| STRING | Solyc08g006190.1.1 | 1e-29 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA322 | 15 | 171 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G31610.1 | 3e-08 | B3 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|