PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g03930
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 239aa    MW: 28078.6 Da    PI: 8.0376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g03930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.7e-15855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+ +v+++G ++W+  a+  g++Rt+k+c++rw +yl
       CA06g03930  8 KGPWTEQEDLQLAFYVNLFGDRRWDFLAKVSGLRRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding54.82.2e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l+++++ ++G++ W++Ia +++ gRt++++k++w++++
       CA06g03930  61 RGKMTPQEERLILELHSKWGNR-WSKIAMKLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.439355IPR017930Myb domain
SuperFamilySSF466891.39E-286102IPR009057Homeodomain-like
SMARTSM007175.5E-12757IPR001005SANT/Myb domain
PfamPF002496.7E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-20962IPR009057Homeodomain-like
CDDcd001677.33E-81055No hitNo description
PROSITE profilePS5129427.51556110IPR017930Myb domain
SMARTSM007172.6E-1760108IPR001005SANT/Myb domain
PfamPF002494.9E-1661105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2463109IPR009057Homeodomain-like
CDDcd001672.69E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAQEEMRKGP WTEQEDLQLA FYVNLFGDRR WDFLAKVSGL RRTGKSCRLR WVNYLHPGLK  60
RGKMTPQEER LILELHSKWG NRWSKIAMKL PGRTDNEIKN YWRTHMRKKA QDERKNKAST  120
ISPSSSFSNS SSFYSNSPDV DFTPIMENNE RNFYDTGGVE KKINDGGKMK VYSMDEIWKD  180
IELSEESETM NNIKPIMSSP LWNYCPNNTL WMSDEEETKM FPQFYNCLDN QDNTFFAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-2851101105MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-28511024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-151HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577226.11e-177PREDICTED: transcription factor MYB48-like
SwissprotQ4JL843e-75MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A2G2Z7N51e-178A0A2G2Z7N5_CAPAN; Transcription factor MYB48
TrEMBLA0A2G3C4S81e-178A0A2G3C4S8_CAPCH; Transcription factor MYB48
STRINGXP_009770621.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-76myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]