PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g04230

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 68aa MW: 7776.27 Da PI: 10.0659

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g04230	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.1	4.7e-13	13	52	2	41
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ri ++s r++ + k ++ + KKAeE+S+LCd++v+viif CA06g04230 13 RILDESARKIILDKTLASLCKKAEEMSILCDTKVSVIIFT 52 7889999*******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.5E-4	4	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.904	4	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-12	4	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-6	6	26	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-11	13	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-6	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-6	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MSDMTRKRRR NTRILDESAR KIILDKTLAS LCKKAEEMSI LCDTKVSVII FTWEKPMLCL 60 AVFNQGQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	9	RKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015170649.1	1e-17	PREDICTED: MADS-box transcription factor 50-like
Refseq	XP_015170650.1	1e-17	PREDICTED: MADS-box transcription factor 50-like
TrEMBL	A0A2G2Z7T2	5e-41	A0A2G2Z7T2_CAPAN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	5e-08	AGAMOUS-like 96