PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g04850
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 716aa    MW: 78869.6 Da    PI: 8.8306
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g04850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-08610659147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       CA06g04850 610 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 659
                      678999********************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.85E-7410501IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.383605664IPR017930Myb domain
SMARTSM007175.3E-8609662IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10610660IPR009057Homeodomain-like
SuperFamilySSF466896.32E-16611692IPR009057Homeodomain-like
CDDcd116603.57E-17611661No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MVLHKRLDYG FNGYQVPHIP RATRSARGRG NIRKKSDSNE MCAFDLLTSV AGKLLLEGES  60
TSNPSLKDRS AVMKDTAETF KEDEDTSLKE NPYTEGCQER GFFISQIVSE APAVSHCLSK  120
STDTLAGPAS AITSSDCSEK LGSAEQFINA ESKIEKVNCS TKAEQEASGC GDFSSCTLGA  180
ESKNQVKIDL SNYAKISTNK NAAISSLDFP DLWDRKHSML VASDNTVKFS LSTDPDPFGS  240
FPVIRNDVQL ANKDDDEKSC VCTQPRTSNK AFRPALHVGD WRKRKLQASK YLEVKPQSND  300
EGHVNVDNET RHVYQNRKND YTNERSQRDF PFKKRKLYYC NLFSNSNGGS SDGICSSPTK  360
DLSLDASGYS LASSEEAHAA AGTSIPKGAR ASFRSNDSHE FLMIQSLFSS VKLKIKSFRV  420
PELFVEIPEN ATVGSLKACK SRSVMEAVTA ILGGGLRIGV VFQGKKVRDD NKTLFQAGIS  480
HEDKLDALGF TLEPSPSRAS PPLAPEGRSR VLPCETAQPL TSRCSPAPTV IRNGIQQGTY  540
NGFTDHPRTN LSNFIDSDHD SAPSPPDAFL EKNAADSRAL VPVAAVDAEA LAVVPMRKPK  600
RSETAQRRIR RPFSVSEVEA LVQAVEKLGT GRWRDVKMRA FDNAKHRTYV DLKDKWKTLV  660
HTARISPQQR RGEPVPQELL DRVLLVHAYW SQQQARQQMK HHSVTRLLLS DGCKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-545977004107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326335QRDFPFKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575851.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016575852.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016575853.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016575855.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016575856.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016575857.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016575858.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A1U8GX830.0A0A1U8GX83_CAPAN; telomere repeat-binding protein 5-like isoform X1
STRINGPGSC0003DMT4000054760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-125TRF-like 2