PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g05790
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 297aa    MW: 32758.5 Da    PI: 10.3828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g05790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-125195147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       CA06g05790 51 RESWTEPEHDKFLEALQLFDRD-WKKIKAFVG-SKTVIQIRSHAQKY 95
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-1645101IPR009057Homeodomain-like
PROSITE profilePS5129414.28846100IPR017930Myb domain
TIGRFAMsTIGR015574.5E-184998IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.7E-649101IPR009057Homeodomain-like
SMARTSM007178.3E-105098IPR001005SANT/Myb domain
PfamPF002493.2E-105195IPR001005SANT/Myb domain
CDDcd001678.84E-85396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVMALPNLGS FSNPTATASP AGATASTSNP LSPSDDPSKK IRKPYTITKS RESWTEPEHD  60
KFLEALQLFD RDWKKIKAFV GSKTVIQIRS HAQKYFLKVQ KSGTSEHLPP PRPKRKAAHP  120
YPQKASKSAP AVSPVPTSFQ ASLPLPEPGF VKRPDSSFLP SNQATVVPVP SWTDNSVPPV  180
SLSQIKKDYV RETGQLVANN RCCSSNESTP RSKSTVKVIE RTQAPSLRVL PDFAQVYNFI  240
GSVFDPAVTG HLQKLKKMDR IDVETVLLLM RNLSINLTSP DFEHDVSMLR LLHSDF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2543604e-67AC254360.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-20n17 map 6, complete sequence.
GenBankAC2544094e-67AC254409.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-45k12 map 6, complete sequence.
GenBankAC2544214e-67AC254421.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-44l22 map 6, complete sequence.
GenBankAC2544644e-67AC254464.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-62j20 map 6, complete sequence.
GenBankAC2544934e-67AC254493.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-15i11 map 6, complete sequence.
GenBankAC2544984e-67AC254498.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone sle-6i6 map 6, complete sequence.
GenBankHG9754454e-67HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755184e-67HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575737.10.0PREDICTED: protein REVEILLE 6 isoform X1
RefseqXP_016575738.10.0PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-98RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2G2Z9590.0A0A2G2Z959_CAPAN; Protein REVEILLE 3
STRINGSolyc06g036300.2.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.25e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]