PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g06440
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 241aa    MW: 27677.1 Da    PI: 7.5339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g06440genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-1187139155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 ++++h e Er+RR+++ + ++ Lr+ lP  +    ++K s ++    A +YI +Lq
  CA06g06440  87 KKVMHRETERQRRQEMSTLYACLRQQLPLeN---IKGKRSTSDHILVAANYIEQLQ 139
                 6899*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1483156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.63E-984143No hitNo description
PROSITE profilePS5088812.55786138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-887139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-888157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.009192144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDNFHSMFPL QQDDDANDSH RQLFFPHHEP YTNPSNFIYQ EDLVTDFTPF DSLELGDNNL  60
RFNNNNNQRG NRLQKWSVAS TEENKQKKVM HRETERQRRQ EMSTLYACLR QQLPLENIKG  120
KRSTSDHILV AANYIEQLQK NVKHLEERRE KLKKESIGLS NLDYPKSGSS STSSSSPATI  180
VTVKECLDGM EILVNCCLKN EGFRLSRVLQ VLLQEGLSIV NCSCTKTNSK SVLHTIRTEV  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154RREKLKKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577192.11e-180PREDICTED: transcription factor bHLH36-like
TrEMBLA0A2G2Z8Z21e-179A0A2G2Z8Z2_CAPAN; Uncharacterized protein
STRINGSolyc06g035490.2.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-26bHLH family protein