PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g07080
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 340aa    MW: 37973.1 Da    PI: 10.2689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g07080genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.5e-31273330359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  CA06g07080 273 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHS 330
                 9************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-18224269IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-33259330IPR003657WRKY domain
PROSITE profilePS5081129.493266332IPR003657WRKY domain
SuperFamilySSF1182906.28E-27269331IPR003657WRKY domain
SMARTSM007742.9E-38271331IPR003657WRKY domain
PfamPF031063.9E-27273329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEEIEEANRV AVESCHRVIT MLSQPHDQKQ FGNVARETGE AVHKFKKVAT LLNSNLGHAR  60
VRKAKKIITP LPQNLLLESP SCKTYDQPKS LQLLPITEIG SNVKSTLTLA NPSLELSSHS  120
KNPLQLAQQT PLSSYHFLQQ QQQRRYQLQQ QQLKQQTDMM YRRSNSGISL NFDSSTCTPT  180
MSSTRSFISS LSIDGSVANL DGNANAFHFI GASRSADQSS FQHRKRCSGR GEEGSVKCGS  240
SGRCHCSKKR KHRVKRSIKV PAISNKLADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSM  300
RGCPARKHVE RCLEEPSMLI VTYEGEHNHS RLPSQSANA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-202673331075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565458.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-124WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A1U8G9R90.0A0A1U8G9R9_CAPAN; Putative WRKY transcription factor 21
TrEMBLA0A2G2Z9240.0A0A2G2Z924_CAPAN; probable WRKY transcription factor 21
STRINGXP_009618397.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-117WRKY DNA-binding protein 21