PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g07150

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bZIP

Protein Properties

Length: 351aa MW: 38783.1 Da PI: 6.1372

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g07150	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.4e-10	151	207	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A+rs +RK +i eLe+kv++L++e ++L +l + + ++ CA06g07150 151 KRAKRILANRQSASRSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTQFTN 207 9*****************************************999877766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-16	147	211	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	149	212	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-8	151	205	No hit	No description
Pfam	PF00170	1.0E-8	151	199	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.61E-10	151	202	No hit	No description
CDD	cd14703	4.53E-22	152	201	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MQDPSNPNSM QLNQTPSLSA TFRPSHHRRA HSEVNFRLPE DLDLVSDPFD ASAASFEEIG 60 SEDDFFSTYM DIEKLGTGSN PTDVPGFNNA AAGSSGGLVV DCGDGEKSFT RPRHRHSNSV 120 DSSSLLLSES IEAKKAMAPD KLAELWTIDP KRAKRILANR QSASRSKERK ARYITELERK 180 VQTLQTEATT LSAQLTLFQR DTTQFTNENT ELKLRLQAMA QQAQLRDALN EALKQEVERL 240 KMATGELSSS DAYNLGMQHI PYNQSAFFSH QLQPGPNESQ NIQMQQFHSL QDSLLAPHRR 300 LPAGHVQALP DTMQQDPLGR FQGLEIGGRG MHLVKTEAPS ISASESSSTF *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MQDPSNPNSM QLNQTPSLSA TFRPSHHRRA HSEVNFRLPE DLDLVSDPFD ASAASFEEIG  60
SEDDFFSTYM DIEKLGTGSN PTDVPGFNNA AAGSSGGLVV DCGDGEKSFT RPRHRHSNSV  120
DSSSLLLSES IEAKKAMAPD KLAELWTIDP KRAKRILANR QSASRSKERK ARYITELERK  180
VQTLQTEATT LSAQLTLFQR DTTQFTNENT ELKLRLQAMA QQAQLRDALN EALKQEVERL  240
KMATGELSSS DAYNLGMQHI PYNQSAFFSH QLQPGPNESQ NIQMQQFHSL QDSLLAPHRR  300
LPAGHVQALP DTMQQDPLGR FQGLEIGGRG MHLVKTEAPS ISASESSSTF *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-166	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-166	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016575611.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-112	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U8GWI8	0.0	A0A1U8GWI8_CAPAN; Transcription factor RF2b
TrEMBL	A0A2G2Z8U0	0.0	A0A2G2Z8U0_CAPAN; transcription factor RF2b
STRING	PGSC0003DMT400070968	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-92	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]