PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g07520

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 207aa MW: 22683.6 Da PI: 5.2152

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g07520	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.3e-42	43	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la++++ CA06g07520 43 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQVQLAKAQA 141 7***********************************************************************************************998 PP DUF260 100 e 100 e CA06g07520 142 E 142 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.983	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-42	43	140	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEHSTDTTTA TTITPSPYSS RSVSPSSSSP PDSPPLPQVV VSPCAACKIL RRRCAEKCVL 60 APYFPPNDPI KFTTAHRVFG ASNIIKFLQE LPEFQRADAV SSMVYEANAR LRDPVYGCAG 120 AICQLQKQVN ELQVQLAKAQ AEIVNMQHEQ ANFMTLICME MAQSPQTSPQ QSLENFTNIP 180 QHGSSQSDVS FLDESNFGSI WETLWA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-42	42	145	10	113	LOB family transfactor Ramosa2.1
5ly0_B	8e-42	42	145	10	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	3e-76	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	3e-76	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577197.1	1e-153	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-69	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1U8H163	1e-151	A0A1U8H163_CAPAN; LOB domain-containing protein 11
TrEMBL	A0A2G2Z904	1e-151	A0A2G2Z904_CAPAN; LOB domain-containing protein 1-like
TrEMBL	A0A2G3C5Y5	1e-151	A0A2G3C5Y5_CAPCH; LOB domain-containing protein 11
STRING	PGSC0003DMT400065346	1e-109	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-67	LOB domain-containing protein 1