PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g07980
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bZIP
Protein Properties Length: 245aa    MW: 26677.9 Da    PI: 6.0474
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g07980genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.2e-10154202553
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                 kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+
  CA06g07980 154 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTLLQ 202
                 9*****************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-15150214IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875152215IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.6E-9154209No hitNo description
SuperFamilySSF579593.52E-11154205No hitNo description
PfamPF001702.8E-9154202IPR004827Basic-leucine zipper domain
CDDcd147031.91E-23155204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSDNPPRKFG HRRAHSEILT LPDDISFDSD LGVVGLDGPS LSDETEEDIF SMYLDMDKLN  60
SSSLSSDFQV GESSSAAAAS GSSQTQGMTS GTNKVAPTVS EKPRVRHQHS QSMDGSTTIK  120
PEMLMSGVEE PSSAETKKAT SAAKLAELAL IDPKRAKRIW ANRQSAARSK ERKMRYIAEL  180
ERKVQTLQTE ATTLSAQLTL LQRDTSGLTA ENSELKLRLQ TMEQQVHLQD GKNLSMTSLV  240
TFCP*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0134850.0BT013485.1 Lycopersicon esculentum clone 132168R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575403.11e-165PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-111POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1U8H2V61e-164A0A1U8H2V6_CAPAN; probable transcription factor PosF21
TrEMBLA0A2G3C6D01e-164A0A2G3C6D0_CAPCH; Putative transcription factor PosF21
STRINGSolyc06g053350.2.11e-143(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-85bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]