PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g08920

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 187aa MW: 20124.1 Da PI: 7.8765

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g08920	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.4	8.8e-42	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++p+++r d+++slvyeA++r+rdPvyG++g i++lqqq++ l+ael+++++ CA06g08920 15 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPKSQRADTANSLVYEANVRLRDPVYGCMGAISALQQQVHALQAELNVIRA 113 7**********************************************************************************************9987 PP DUF260 100 e 100 e CA06g08920 114 E 114 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.265	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.0E-42	15	112	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MLVPPGSTTS NTVTPCAACK LLRRRCAQEC PFSPYFSPHE PQKFASVHKV FGASNVSKML 60 MEVPKSQRAD TANSLVYEAN VRLRDPVYGC MGAISALQQQ VHALQAELNV IRAEIMKYNT 120 SLTPSSHITS LLSSGEVSVV ALPPPPPSLI LPPTIFSADA IMYTQPSTTT TEFSTISSEN 180 NISYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-47	8	118	4	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-47	8	118	4	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-71	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-71	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577136.1	1e-134	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	5e-69	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2G2Z9N6	1e-134	A0A2G2Z9N6_CAPAN; LOB domain-containing protein 15
STRING	Solyc06g050430.2.1	4e-94	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	5e-67	LOB domain-containing protein 13

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]