PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g09580
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 185aa    MW: 20837.7 Da    PI: 10.4134
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g09580genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-13109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+++    Rt+ q+ s+ qky
       CA06g09580 109 SWTEEEHRCFLIGLEKLGKGDWRGISKHYVPSRTPTQVASHAQKY 153
                      7***************************999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.213102158IPR017930Myb domain
SuperFamilySSF466891.72E-18103159IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-17105156IPR006447Myb domain, plants
SMARTSM007176.6E-10106156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-11106152IPR009057Homeodomain-like
CDDcd001671.20E-9109154No hitNo description
PfamPF002492.7E-11109153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MVSMTKDARK CSHCGHNSRT CNSKGVGGIK LFGVRIDDNY NSNSNNNNHG HGNIKIKMRK  60
IGDYESIRRS KSLGNLEHAA NYDNIGGVEA GYLSDGPIHS LRHRKKGTSW TEEEHRCFLI  120
GLEKLGKGDW RGISKHYVPS RTPTQVASHA QKYFIRMSSI DKKKRRPSVF DVYLKDLVIN  180
FSFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KKKRR
2161166KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577174.11e-129PREDICTED: transcription factor MYB1R1-like
SwissprotQ9FKF97e-45M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A1U8H9S31e-128A0A1U8H9S3_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Z8I31e-128A0A2G2Z8I3_CAPAN; transcription factor MYB1R1-like
STRINGPGSC0003DMT4000556161e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-47MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]