PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g11660
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 201aa    MW: 22921 Da    PI: 9.2395
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g11660genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.86.3e-1749134290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Yn+Y    GF vrk  ++++  +ge+t+r f Cs+eg++++ +   ++++r+r e r+gC  ++k k + +g wev +++  H+H++ 
  CA06g11660  49 AYNSYVVARGFGVRKGGKTNN-VKGETTRRLFLCSCEGQSDKLSPF-QERKRQRLEYRCGCMTRIKFKIS-NGIWEVCEFNDVHSHPMI 134
                 5***************98877.8888**************999988.99999***************999.***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-1449134IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MKDAHGDKGK DSSAQEDFSV NEPNICNTSK NFVFEIDMKI NSEKESYNAY NSYVVARGFG  60
VRKGGKTNNV KGETTRRLFL CSCEGQSDKL SPFQERKRQR LEYRCGCMTR IKFKISNGIW  120
EVCEFNDVHS HPMIEDNLKH FIHSGRRLTN ATKNIVGSMI DAGIRTKKVV RYLQNEAGEV  180
KNVGFIEQDA QTLFKHIREI *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628526.12e-75PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_016467903.12e-75PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_019266793.17e-75PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2G2Z9X61e-147A0A2G2Z9X6_CAPAN; Uncharacterized protein
STRINGXP_009628526.18e-75(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1726931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.16e-14FAR1-related sequence 10