PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g11670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25129.7 Da    PI: 8.9977
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g11670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.1e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien+ nrqvt+skRrngi+KKA E+ vLCda+v++iif+++gk++ey+s
  CA06g11670  9 KRIENSNNRQVTYSKRRNGIIKKAREITVLCDAKVSLIIFGTSGKMHEYCS 59
                79***********************************************96 PP
2K-box81.91.4e-2771169199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 yqk+sg++l++ak+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ +e++Le++l++i +k++e+l++  ++ q  e+e+++ + aL++k +
  CA06g11670  71 YQKASGRRLWDAKHENLSNEIDRIKKENDSMQVKLRHLKGEDINSLNHKELMVMEEALENGLSSISAKQSEILRMVRKNDQILEEEHKQLQYALHQKEM 169
                 8999********************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.071161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-36296IPR002100Transcription factor, MADS-box
CDDcd002654.21E-41280No hitNo description
PRINTSPR004043.7E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.0E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.6E-1782163IPR002487Transcription factor, K-box
PROSITE profilePS5129713.99184170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRGKIEIKR IENSNNRQVT YSKRRNGIIK KAREITVLCD AKVSLIIFGT SGKMHEYCSP  60
STTMSDILDG YQKASGRRLW DAKHENLSNE IDRIKKENDS MQVKLRHLKG EDINSLNHKE  120
LMVMEEALEN GLSSISAKQS EILRMVRKND QILEEEHKQL QYALHQKEMA AMGGNMRGIH  180
EEAMYHQRER EDYEYQQMPF ALRVQPMQPN LHERM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-18191183MEF2 CHIMERA
6bz1_B8e-18191183MEF2 CHIMERA
6bz1_C8e-18191183MEF2 CHIMERA
6bz1_D8e-18191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU8122760.0GU812276.1 Capsicum annuum PPI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311952.11e-159floral homeotic protein PMADS 2
SwissprotQ074741e-143MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A1U8H2D31e-158A0A1U8H2D3_CAPAN; floral homeotic protein PMADS 2
TrEMBLA0A2G3C7591e-158A0A2G3C759_CAPCH; Floral homeotic protein GLOBOSA
TrEMBLE7CBE91e-158E7CBE9_CAPAN; Floral homeotic protein GLOBOSA
STRINGXP_009608638.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]