PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g13040
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 558aa    MW: 61800.7 Da    PI: 6.6272
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g13040genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.81.8e-26317370155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k +++WtpeLH++Fv+ave+L G+++A+P++ilelmkv+gLt+++++SHLQk+R+
  CA06g13040 317 KMKVDWTPELHKKFVKAVEKL-GIDQAIPSRILELMKVEGLTRHNIASHLQKFRM 370
                 5689*****************.********************************8 PP
2Response_reg33.52.2e-12201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++ + ++ +r+ le+ +y +v ++ + +eal  +  k   +++ ++ ++  ++dG   lk ++ ++ +lp i+v+   + +++ +++ +Ga 
    CA06g13040  20 VLLLDKDSNSASDMRSRLEEMEY-IVYAFCNETEALSAISSKSevFHVAIVEVSAGNSDG--GLKFLEGAK-DLPTIMVSNIHSISTMMKCIALGAV 112
                   8999*******************.***************777778************877..345555555.8*******9999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp + ++l++
    CA06g13040 113 EFLQKPLSDDKLRN 126
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.2E-1616159No hitNo description
SuperFamilySSF521725.41E-1516135IPR011006CheY-like superfamily
SMARTSM004484.6E-418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.59519132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.23E-721131No hitNo description
PROSITE profilePS5129414.63314373IPR017930Myb domain
SuperFamilySSF466892.33E-17315373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25315374IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-24317371IPR006447Myb domain, plants
PfamPF002492.5E-7320368IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MVCTENDLLG WKDFPKGLRV LLLDKDSNSA SDMRSRLEEM EYIVYAFCNE TEALSAISSK  60
SEVFHVAIVE VSAGNSDGGL KFLEGAKDLP TIMVSNIHSI STMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFHSGG KNVAESLKPV KESLLSMLEL QPVKREADSE NSNEAEPLTS  180
VLENQKESPN CCDKYPAPST PQHKQGVRSV DDGDFQDHTI LSNEQDSEVH EGDTKSVETT  240
CCDSVAETSI LADSAGRLEV AITKDERDSA ADQNMEDPIA TCSRSNDYPA DGSTRSAESN  300
KASGLHSSSG TKANKKKMKV DWTPELHKKF VKAVEKLGID QAIPSRILEL MKVEGLTRHN  360
IASHLQKFRM QRRQILPKED EKRWPRPQLR DSVQRTYYYP HKPVMAFPTY HPNNAPTAGQ  420
FYPPWIPPGG YPNGAHMWGS PYYPGWQPPE NWHWNPHSGL YADVWGCPVT PPSLGSCTPY  480
LQNASGIHNR YGIIQKSVDL HPAEEVIDKV VKEAIHKPSL PLPLGLKSPS TESVLDALSK  540
QGISAVPSRI NGSRRPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16315375363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575041.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016575042.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA431e-134APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1U8GUW70.0A0A1U8GUW7_CAPAN; Uncharacterized protein
TrEMBLA0A1U8GUX10.0A0A1U8GUX1_CAPAN; two-component response regulator-like APRR2
STRINGXP_009595585.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-137ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]