PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g13480
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 102aa    MW: 11971.5 Da    PI: 5.7665
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g13480genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.92.5e-115499146
        FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46
                kfY +YA++  Fsvr+  + +s+++++i+ ++fvCsk+g+r+++ +
  CA06g13480 54 KFYLDYAHRSDFSVRRFCMVRSRKDKSIIGQEFVCSKQGFRSKKIR 99
                6****************************************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-85499IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MENSNLYEEN IGVEVLSEEI DMDKTGQIVP YIDVENSHDP YISKEFQSLD DSFKFYLDYA  60
HRSDFSVRRF CMVRSRKDKS IIGQEFVCSK QGFRSKKIRK Q*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-47HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167012.12e-36PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G3CXF44e-44A0A2G3CXF4_CAPCH; Uncharacterized protein
STRINGSolyc02g092170.1.12e-25(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-12FAR1 family protein