PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g13580
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 580aa    MW: 64374.9 Da    PI: 7.5576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g13580genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.6e-33240297260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  CA06g13580 240 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 297
                 8****************************************.***************85 PP
2WRKY106.61.3e-33412470159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d k v++tYeg+Hnh+
  CA06g13580 412 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASQDIKSVITTYEGKHNHD 470
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-29231298IPR003657WRKY domain
PROSITE profilePS5081124.088234298IPR003657WRKY domain
SuperFamilySSF1182901.09E-25235298IPR003657WRKY domain
SMARTSM007749.2E-37239297IPR003657WRKY domain
PfamPF031061.3E-25240296IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37397472IPR003657WRKY domain
SuperFamilySSF1182905.36E-29404472IPR003657WRKY domain
PROSITE profilePS5081138.618407472IPR003657WRKY domain
SMARTSM007741.1E-38412471IPR003657WRKY domain
PfamPF031061.0E-25413470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MAASSFSFPT SSSFMTTSFT DLLASSDDYP ITKGLGDRIA ERTGSGVPKF KSLPPPSLPL  60
SPPPFSPSSY FAIPPGLSPT ELLDSPVLLS SSNVLPSPTT GSFPAQAFNW KSSSNNQDVK  120
QEEKNCSDFS FQTQVGTAAS ISQSQTSHVS LVLLPPSQIS CRFILLYMPE ILIKRVSLVT  180
LILCQAWNYQ EPTKQDGLSS DQNANGRSEF NTMQSFMQNN DHSNSGNGYN QSIREQKRSD  240
DGYNWRKYGQ KQVKGSENPR SYYKCTYPNC PTKKKVERSL DGQITEIVYK GNHNHPKPQA  300
TRRSSSSTAS SAIQSYNTQT NEIPDHQSYG SNGTGQIDSV ATPENSSISF GDDDHEHTSQ  360
KSRSRGDDLD EEEPDSKRWK RESESEGLSA LGSRTVREPR VVVQTTSDID ILDDGYRWRK  420
YGQKVVKGNP NPRSYYKCTS PGCPVRKHVE RASQDIKSVI TTYEGKHNHD VPAARGSGNH  480
SINRPIAPTI TNNNSAMAIR PSVTSHQSNY QVPMQSIRPQ QFEMRAPFTL EMLQKPNNYG  540
FSGYANSEDS YENQLQDNNG FSRAKNEPRD DMFMESLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38223473178Probable WRKY transcription factor 4
2lex_A7e-38223473178Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4024210.0DQ402421.1 Capsicum annuum WRKY-type transcription factor (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311944.10.0probable WRKY transcription factor 25
TrEMBLA0A1U8H1Q50.0A0A1U8H1Q5_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZAP80.0A0A2G2ZAP8_CAPAN; probable WRKY transcription factor 25
STRINGPGSC0003DMT4000432040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-112WRKY DNA-binding protein 33