PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g13740

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

G2-like

Protein Properties

Length: 247aa MW: 27384.1 Da PI: 9.244

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g13740	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH++Fv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl CA06g13740 27 KPRLRWTAELHDQFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 81 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-31	24	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.563	24	84	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-16	27	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-24	27	82	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-9	29	80	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-19	127	172	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MYNSSGMGRG GGFMYENDGV VMTRDPKPRL RWTAELHDQF VDAVTKLGGP DKATPKSVLR 60 LMGLKGLTLY HLKSHLQKYR LGQLAKKQNA AEANKENCGD SGQFSLHSSG PSTSSLSMNF 120 MQGEVVPVAD AVMYQIEVQK RLQEQLQVQQ KLQMRIEAQG KYLQAILDKA QKKLPNMNSP 180 SAPEATTAQL TAFSSPLSNL LDYTVHGENR DNNIELLPTP NHIVEKEQKN DMNSINFDLN 240 SRSSFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-20	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	6e-44	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	6e-44	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574986.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X2
Swissprot	C0SVS4	9e-71	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1U8GUR4	0.0	A0A1U8GUR4_CAPAN; Myb family transcription factor APL
TrEMBL	A0A2G2ZAL4	0.0	A0A2G2ZAL4_CAPAN; myb family transcription factor APL-like isoform X2
STRING	PGSC0003DMT400052695	1e-126	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-48	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]