PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g15210
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 218aa    MW: 23486.3 Da    PI: 8.7164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g15210genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-06192215629
                 HHHHHHHHHHHHHHHHHHHCTSCC CS
         HLH   6 nerErrRRdriNsafeeLrellPk 29 
                 +++Er RR ri +++ +L+el+P+
  CA06g15210 192 SIAERVRRTRISDRIRKLQELVPN 215
                 689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.763186218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-5189217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-5191217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MQRGATGTGA GGGLSRFRSA PATWLEALLE SDDTENETEV VLNPSSPILH TPNKPPPHPS  60
STHKLPELKM DPGLFESVGG STSSSFLRQN SSPAEFLAQI SSDAGGYFSS YGIPSSLEYL  120
SPSVDVSQSV KRGREGNSES SPRKLKSQLK GEPSGQLHGS GGSLDAEMEK LMDDLVPCKV  180
RAKRGCATHP RSIAERVRRT RISDRIRKLQ ELVPNMDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754456e-62HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755186e-62HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556371.11e-158PREDICTED: transcription factor bHLH81-like
SwissprotQ9C8P81e-48BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A1U8FCF31e-157A0A1U8FCF3_CAPAN; Transcription factor bHLH80
TrEMBLA0A2G2ZB001e-157A0A2G2ZB00_CAPAN; transcription factor bHLH81-like
TrEMBLA0A2G3C8571e-157A0A2G3C857_CAPCH; Transcription factor bHLH80
STRINGPGSC0003DMT4000804181e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-39bHLH family protein