PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g16130

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 337aa MW: 38421.3 Da PI: 6.1353

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g16130	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.7	8.3e-38	62	161	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+s ++k++++l++ +++am+++++++++ra+dPv G++++i++lq++++ kael+ + + CA06g16130 62 ACAACKYQRRKCAPDCALAPYFPHDRQRQFLNAHKLFGVSSITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQHHIDYCKAELDIVLH 160 7*********************************************************************************************98877 PP DUF260 100 e 100 + CA06g16130 161 Q 161 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.716	61	162	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-35	62	157	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MTSFSTSNNN NIAIHHHHHQ TPHTFISDHN NLNHHKYTKR VHNNNDNNHK NVLLRVSGAG 60 QACAACKYQR RKCAPDCALA PYFPHDRQRQ FLNAHKLFGV SSITKIIRHL DQPLKDEAMR 120 TIIFQSDVRA NDPVGGCYRI IRDLQHHIDY CKAELDIVLH QLAYCRAQAV AAAAVSEQQQ 180 ILTDHHAADQ ESFNDNNCDG VVNQADPLVN YNNASPYEQQ PIDQYHPHYS YYNHPRDQQT 240 EDDQQYDEIQ DGQLDLADIN FPWSLHEQES TSTSAPNSMM KQLSVNDQCD NIKEPILEGI 300 SGFGSFEQDQ TFDQHRSVTA LCSLFFDYLD VLSLSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-24	58	156	7	105	LOB family transfactor Ramosa2.1
5ly0_B	3e-24	58	156	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016578570.1	0.0	PREDICTED: LOB domain-containing protein 22
TrEMBL	A0A2G2ZBQ3	0.0	A0A2G2ZBQ3_CAPAN; LOB domain-containing protein 27
STRING	PGSC0003DMT400012498	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-52	LOB domain-containing protein 22