PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g16390

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 206aa MW: 22585.8 Da PI: 7.0453

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g16390	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.5e-39	19	78	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds ntkfCyynny+lsqPr+fCk+C+ryWtkGG lrn+PvGg++rkn k+s CA06g16390 19 QEVLKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGILRNIPVGGSSRKNSKRS 78 6789****************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	10	69	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	20	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	22	76	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	24	60	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MQDPSSLIYS QIKPQFPDQE VLKCPRCDSI NTKFCYYNNY NLSQPRHFCK NCKRYWTKGG 60 ILRNIPVGGS SRKNSKRSSS SSSSSKQSLR TSSLSPSSAQ NGKIEVFPTP AFPAFDQESP 120 ILDANGPFGP FLVSNGSEIG NLLEGLNPNG PNYSGSDDAA AQSENNSTRD DEYLDVQKGE 180 DSNCWNVNTN SWADLAIYTP GSRFQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC219224	2e-83	AC219224.1 Solanum lycopersicum chromosome 6 clone C06SLm0074G21, complete sequence.
GenBank	HG975445	2e-83	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	2e-83	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554856.1	1e-149	PREDICTED: dof zinc finger protein DOF3.1-like
Swissprot	O82155	5e-39	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A2G2ZBK8	1e-148	A0A2G2ZBK8_CAPAN; Dof zinc finger protein DOF1.7
STRING	Solyc06g062520.1.1	2e-85	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-35	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]