PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g16490

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 205aa MW: 23002.1 Da PI: 10.1698

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g16490	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.4	1.1e-07	110	152	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rrRR+ri +++ L++l+P ++ a++L +A +Y+k L CA06g16490 110 AAARRRRERISERIRVLQKLVPGG-----SNMDTASMLDEAANYLKFL 152 567*****************95.....48*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.786	103	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-14	108	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-12	109	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.9E-12	109	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-5	111	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MERKEHVSIG PSHISTRDYG SQLIAGNDQP KSKKSRSEYK HPSSSNLNFH QASSSACSVD 60 EPDAEAIAHM KEMIYRAAAL RPMSSINTEE VMAEKPKRKN VRISTDPQTA AARRRRERIS 120 ERIRVLQKLV PGGSNMDTAS MLDEAANYLK FLRTQVNALK AFGFNIDPII INNNFTSLSS 180 MPFNYPFPMQ PHFPLQNLNP IHHP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	115	KRKNVRISTDPQTAAARRRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554844.1	1e-117	PREDICTED: transcription factor bHLH87-like
Refseq	XP_016554845.1	1e-117	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	5e-61	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2G2ZBG8	1e-149	A0A2G2ZBG8_CAPAN; Transcription factor bHLH87
STRING	PGSC0003DMT400012487	1e-112	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-49	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]