PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g18230
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 418aa    MW: 46027 Da    PI: 9.758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g18230genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.1e-11120171255
                 HHHHHHHHHHHHHHHHHHH..HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsaf..eeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r +h++ E+rRR++iN++     + +++P++    ++K +Ka+ L +++eYI+ Lq
  CA06g18230 120 RSKHSATEQRRRSKINDRHvtTIILKIIPHS----DQKRDKASFLLEVIEYIQFLQ 171
                 889***************8778999*****9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-18115190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-13116190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.227118170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-8120175No hitNo description
SMARTSM003537.0E-4124176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MKNGKTVKEN LAGDRHVIRE AGVNIGGGKP TTSLERQSQF SSNHNHNTAT LSSHSSPQQP  60
SAMDNQSFIH MITSARNAQE DNDDEEEEFV VKKESPSPSR GNLSVKVDGK NSDQKPNTPR  120
SKHSATEQRR RSKINDRHVT TIILKIIPHS DQKRDKASFL LEVIEYIQFL QEKVHKYEGS  180
YQGLENKPST LPWNKFNSMA QGLIDHSQGT NSASSHALIH AAQFDENKIG ISATGPVNGQ  240
TLEPKRTSSV KERGQLSELT NKGTTLCMQP NTFPFCANTS IASLQSTMAP DAVTLELKSQ  300
PQFSLSRSNV TNYAVTDHKL KGQEMSIESG TVSISSIYSQ RLLNTLKQAL QKSGVDLLQA  360
NMSVQIDLAK RANDRSNASA SNFKDDNISS NNQPTSQSIH TSTRDESVHT FKRLKTN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-103HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-103HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555926.10.0PREDICTED: transcription factor BIM1-like isoform X1
RefseqXP_016555927.10.0PREDICTED: transcription factor BIM1-like isoform X1
TrEMBLA0A1U8FB590.0A0A1U8FB59_CAPAN; transcription factor BIM1-like isoform X1
STRINGSolyc06g069370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.32e-55bHLH family protein