PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g18640
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 389aa    MW: 43568.1 Da    PI: 8.6077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g18640genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16204250455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn++ErrRRdriN ++  L++l+P+a      K +Ka++Le++++Y+k+Lq
  CA06g18640 204 IHNQAERRRRDRINGKMKALQKLVPNA-----SKTDKASMLEEVIRYLKQLQ 250
                 5*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-17197270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-16197254No hitNo description
SuperFamilySSF474593.53E-18198268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.866200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13204250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-17206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSRHTWNFSH QKQEQQIVEE EEENRYPRGH VHNQQDRNHL DPMSSKCEVA ELTWENGQVA  60
MHRLGSNLPK EQAKHTWGKA GDTLESIVHQ ATFQNQNHSS KLMGISDGHN TQANIDREKN  120
ASYGGQQTRG VLKRMRSDSD PQLYSGGRSV ELISAQTNAK ENDITMVTWP CNEDSDCHGD  180
SENKEEERET KSSNLLKRSR RAAIHNQAER RRRDRINGKM KALQKLVPNA SKTDKASMLE  240
EVIRYLKQLQ AQVQLITSAR NMEQQMMMMS LGMQPHIQMP LLARMGMDST AGMLNNMTAN  300
LPRAPYHSLT AAPLFYPTSS IPTLCPPFMS PAFAMTSSIP NGDAVSSAAA PNVATTSVPF  360
NHPYSAFLPQ VSNSSYMHLL TQSLKLVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200212RAAIHNQAERRRR
2208213ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-117HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555849.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A2G2ZC760.0A0A2G2ZC76_CAPAN; Uncharacterized protein
STRINGSolyc06g069600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-40bHLH family protein