PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g18990
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 297aa    MW: 32387.7 Da    PI: 4.7798
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g18990genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.6e-112361248
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
       CA06g18990  2 IIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 36
                     5788899****.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-15137IPR009057Homeodomain-like
PROSITE profilePS5129419.96140IPR017930Myb domain
SMARTSM007170.002138IPR001005SANT/Myb domain
CDDcd001677.12E-8136No hitNo description
PfamPF002491.0E-9236IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-10247IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MIIHLQALLG NRWAAIASYL PQRTDNDIKN YWNTHLKKKL NKKVESHGND AHDHENNHQE  60
GASTSSSSSQ SRISKGQWER RLQTDIHTAK QALCEALSLD TSPNKTIPIN PEEQQQQQPA  120
VQASMTYASS AENIAKLLQN WMKNSPNSTS SSSSKITQQM SLNNNLSVGA LSSSSPSEGT  180
VNVAPPQGLD SLFSFNSSNN SDVSQSVSID EGGNLISTPE NNNAGIFQVE SKPILPDFKP  240
ESGIHQEESK QNLETQVPLT LLEKWLLDDA NAQAEQEDQL MGIGMGMAMS ETADLF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578359.10.0PREDICTED: myb-related protein 306-like
TrEMBLA0A2G2ZCC60.0A0A2G2ZCC6_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000830761e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-38myb domain protein 94