PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g20010
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 180aa    MW: 19571.9 Da    PI: 7.2018
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g20010genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.17.3e-4410108199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+++l+yeAear+rdPvyG+v+ i+ lq+q+e+l++el+++++
  CA06g20010  10 PCAACKFLRRKCLPGCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNELLPHQREDAVNTLAYEAEARVRDPVYGCVSAITFLQRQVERLQKELDAANA 108
                 7*********************************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2959110IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4210107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MASSSCYNSP CAACKFLRRK CLPGCIFAPY FPPEEPHKFA NVHKIFGASN VSKLLNELLP  60
HQREDAVNTL AYEAEARVRD PVYGCVSAIT FLQRQVERLQ KELDAANADL MRYASGNDMS  120
SAPLIGPHHQ QEIGSTLHNM ALSRRMGYDH HGGGYFPYSP SSWNDQNPSG GGGGGGENV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-64911710118LOB family transfactor Ramosa2.1
5ly0_B1e-64911710118LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549822.11e-125PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML41e-71LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2G2Y0L71e-132A0A2G2Y0L7_CAPAN; LOB domain-containing protein 6
STRINGSolyc06g071660.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.43e-74LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]