PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g20470

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 205aa MW: 22228.2 Da PI: 4.6013

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g20470	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	166.5	3.3e-52	1	102	4	102
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +fw++q ie+atdfknh+lPlarikki+kadedv+misae+Pvl++kace+fi eltlrswlhaeenkrrtl+++diaaa++rtd+fdflvdi+prd CA06g20470 1 MFWNYQrqeIEQATDFKNHQLPLARIKKIMKADEDVRMISAETPVLFAKACEIFIQELTLRSWLHAEENKRRTLQQNDIAAAISRTDTFDFLVDIIPRD 99 6999887789***************************************************************************************** PP NF-YC 100 elk 102 e+k CA06g20470 100 EVK 102 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.19E-31	7	92	IPR009072	Histone-fold
Pfam	PF00808	2.5E-20	20	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.0E-37	21	98	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MFWNYQRQEI EQATDFKNHQ LPLARIKKIM KADEDVRMIS AETPVLFAKA CEIFIQELTL 60 RSWLHAEENK RRTLQQNDIA AAISRTDTFD FLVDIIPRDE VKDEGVGLGL APGGVPYYYP 120 PLGQPAPGGV ILGRPAVPAG AVPGVVPGAV PDVVPGSVPG ADPSMYVPHL PFQVWQSMWQ 180 TSEDHSYPSG GGSSSGQATD DGQM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-52	6	98	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576950.1	1e-150	PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2
Swissprot	Q9SMP0	2e-80	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A1U8H0P6	1e-149	A0A1U8H0P6_CAPAN; nuclear transcription factor Y subunit C-1-like isoform X2
STRING	Solyc06g072040.1.1	4e-98	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4087	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	5e-67	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]