PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g20510

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 151aa MW: 15630.6 Da PI: 4.3262

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g20510	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	46.5	8e-15	2	40	64	102
NF-YC 64 lhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +h+eenkrrtl+k+diaa+++rtd+fdflvdi+prde+k CA06g20510 2 IHSEENKRRTLQKNDIAAVISRTDTFDFLVDIIPRDEVK 40 79**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.3E-10	2	36	IPR009072	Histone-fold
SuperFamily	SSF47113	2.58E-7	3	36	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MIHSEENKRR TLQKNDIAAV ISRTDTFDFL VDIIPRDEVK DEGVGLGLAP GGVPYYYPPL 60 GQPDPGGVML GRPAVPAGVV PGAVPGVVPG TVPGTVPGVV PGAVPGVDPS MYVPHLPFQV 120 WQSMWQISED HSYPSGGGSS SGQGTDDSQM *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	14	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576950.1	4e-78	PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2
Swissprot	Q9SMP0	6e-32	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2G2ZD13	1e-100	A0A2G2ZD13_CAPAN; Nuclear transcription factor Y subunit C-3
STRING	Solyc06g072040.1.1	2e-48	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	7e-21	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]