PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g20860
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family BBR-BPC
Protein Properties Length: 311aa    MW: 34662.5 Da    PI: 9.8658
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g20860genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind313.19.1e-9613101301
   GAGA_bind   1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerd...........................maflqrdkalaer 70 
                 md +g ++ rn+g+ ep  + lk nlglqlmss+ e+ +  + r+   +++++++++ d                           m++ +rd+++++ 
  CA06g20860   1 MDGNGGMNlRNWGFLEPPtTVLKGNLGLQLMSSMDEKPHFGNLRDYQYHHQQQTHQP-DhptvmastnggafhhhrvcglsespmpMEY-MRDAWVNH- 96 
                 999999999*******99899*************87776666666645555554433.3477777888888888999************.*******9. PP

   GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
                      + ++k+l+ l +++       +g++ l++t+s++s+q+ ++p+l +  +         ++++ +++++   +kk+    ++ + k++k kk+kk
  CA06g20860  97 ----KDYREKYLNALSANHP----YLTGYGFLPETSSAQSMQMYQQPNLVKVETA------PLVEEVCQERDTGGLAKKRG-ADKSPVLKSPKPKKAKK 180
                 ....4567788888887775....55789**************666665443332......23334444444444444443.44555678889999999 PP

   GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
                  ++++k++++++   +r++a++ks ++++ng+++D+s++P+P+CsCtG+++qCY+WG+GGWqSaCCtt++S yPLP++ krrg+RiagrKmS gaf k+
  CA06g20860 181 ATTAPKEDSTPSL--PRARAPRKSAEVNINGINMDISRIPIPICSCTGSSQQCYRWGCGGWQSACCTTNLSSYPLPMNIKRRGSRIAGRKMSLGAFMKV 277
                 8888877776666..89********************************************************************************** PP

   GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 LekL++eGy++snp+DL+ hWAkHGtnkfvtir
  CA06g20860 278 LEKLTSEGYNFSNPIDLRPHWAKHGTNKFVTIR 310
                 ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062179.3E-1031310IPR010409GAGA-binding transcriptional activator
SMARTSM012261.7E-1451310IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDGNGGMNLR NWGFLEPPTT VLKGNLGLQL MSSMDEKPHF GNLRDYQYHH QQQTHQPDHP  60
TVMASTNGGA FHHHRVCGLS ESPMPMEYMR DAWVNHKDYR EKYLNALSAN HPYLTGYGFL  120
PETSSAQSMQ MYQQPNLVKV ETAPLVEEVC QERDTGGLAK KRGADKSPVL KSPKPKKAKK  180
ATTAPKEDST PSLPRARAPR KSAEVNINGI NMDISRIPIP ICSCTGSSQQ CYRWGCGGWQ  240
SACCTTNLSS YPLPMNIKRR GSRIAGRKMS LGAFMKVLEK LTSEGYNFSN PIDLRPHWAK  300
HGTNKFVTIR *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578164.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_016578165.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
TrEMBLA0A2G2ZCT70.0A0A2G2ZCT7_CAPAN; Uncharacterized protein
STRINGXP_009761371.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100482026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.34e-79basic pentacysteine 2