PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g21240
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 295aa    MW: 32249.9 Da    PI: 6.6951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g21240genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.3e-10105129126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ f++ G C+y  +C+FaHg
  CA06g21240 105 FKTKLCCKFRA-GVCPYVTNCNFAHG 129
                 69*********.*************8 PP
2zf-CCCH19.41.8e-06183204526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C+ f+    C+yGd+C+F H+
  CA06g21240 183 HCKKFYTEEGCPYGDSCTFLHD 204
                 599999999************7 PP
3zf-CCCH41.91.7e-13238263126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  CA06g21240 238 WKTRICNKWETTGYCPFGGKCHFAHG 263
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-14102137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-8102135IPR000571Zinc finger, CCCH-type
SMARTSM003560.012104130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709104131IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-7105129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601178206IPR000571Zinc finger, CCCH-type
SMARTSM003560.25178205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7179206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-8180206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-15233264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-9234265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737237265IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-8237264IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10238263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDYTGDGGFA GGNVIPDSAA GSGGGFESWG PNFSDQAVWA TEDDYKAWNN GPFCETPSNS  60
SQDGGRHSQN RSGSDPPNKK SRNVQDSDAR VIVTSSSKAI GKMFFKTKLC CKFRAGVCPY  120
VTNCNFAHGI EELRKPPPNW QEIVAAHESE RGGMVEMREE HQIPILSSPD LRGESQRSSK  180
GRHCKKFYTE EGCPYGDSCT FLHDEQSRSR ESVAISVTPT VGGFGNNAAG ATQKPSNWKT  240
RICNKWETTG YCPFGGKCHF AHGAAGMDIT FYLFLVYGDM ISMYIMRLLN IDDL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578131.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ37e-91C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLM1CK580.0M1CK58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000692470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.18e-90C3H family protein