PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g21800
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 295aa    MW: 33487.6 Da    PI: 6.1559
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g21800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.45.8e-29130217291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
  CA06g21800 130 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVNSGKWVVTKFVKEHSHPLSP 217
                 ******************************************9988..9**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-26130217IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
VMENCNLIPS ISSVSVVRTA RHNLLSNLDS LGSLQITDII DATVEFVVDD HVNGEEEEGT  60
VVELRAVDEN VIGGSSSEEA LQQVHDVKVD EDLPEREDLL LEEAQCLDNS TSDEPYVGLE  120
FESEAAAHAF YNAYATRVGF IIRVSKLSRS RRDGSAIGRA LVCNKEGFRM PDKREKIVRQ  180
RAETRVGCRA MILVRKVNSG KWVVTKFVKE HSHPLSPGKG RRDLIYDQYP NEHDKIRELS  240
QQLAAEKKRS ATYKRHLEMI FEHIEEHNQS LSKKIQDIVH NVREMESKDQ HHHR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578081.10.0PREDICTED: uncharacterized protein LOC107875762 isoform X1
RefseqXP_016578082.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A1U8H3M90.0A0A1U8H3M9_CAPAN; uncharacterized protein LOC107875762 isoform X1
TrEMBLA0A1U8H3N30.0A0A1U8H3N3_CAPAN; protein FAR1-RELATED SEQUENCE 5 isoform X2
STRINGPGSC0003DMT4000694951e-176(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115682325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-95FAR1 family protein