PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g22580
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family YABBY
Protein Properties Length: 192aa    MW: 21241 Da    PI: 8.5966
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g22580genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY234.62.2e-7281644170
       YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102
                  ss e+vCyv+CnfCntilavsvP +s++++vtvrCGhC +llsvn+  + q l+ ++  +      + +++ + e+  + + ++++s++++++ + + 
  CA06g22580   8 SSSLERVCYVHCNFCNTILAVSVPCNSMMTIVTVRCGHCGNLLSVNIGPSIQSLPLQDL-Q------QRQDQSSIEDGSRGYGSSSSSTNSYHRFSPI- 98 
                 57789***************************************************995.3......3334444444445555555555566666554. PP

       YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   +d ++pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  CA06g22580  99 -PTDPDLPRSPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164
                 .456789*9999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.3E-7211164IPR006780YABBY protein
SuperFamilySSF470958.9E-9103157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.6E-5112158IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSLDMTYSSS LERVCYVHCN FCNTILAVSV PCNSMMTIVT VRCGHCGNLL SVNIGPSIQS  60
LPLQDLQQRQ DQSSIEDGSR GYGSSSSSTN SYHRFSPIPT DPDLPRSPPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLDGNK QTNKLDHAVA  180
GEAPQKSIGL Y*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677660.0KJ667766.1 Solanum sisymbriifolium YAB2 protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577990.11e-142PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB03e-77YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A1U8H3P01e-141A0A1U8H3P0_CAPAN; putative axial regulator YABBY 2 isoform X1
TrEMBLA0A2G2WMI71e-141A0A2G2WMI7_CAPBA; Protein YABBY 6
STRINGPGSC0003DMT4000151971e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-64YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]