PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g22760
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 83aa    MW: 9623.16 Da    PI: 10.2238
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g22760genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-164811898
                --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                +p +f  ++  +g+ + +kt tl++ +g+sW v +    + +r  ++kGW +Fv++n++ +gD++ F+l+++++f l+v+++r
  CA06g22760  4 IPASFGYKYmkSGQ-KFEKTATLQT-DGKSWPVIV---HSTDRLKFRKGWCKFVRDNNVHVGDVLCFELIDEDNFILKVRIRR 81
                89999999985333.4666777665.*********...6777899*************************99********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.028182IPR003340B3 DNA binding domain
SMARTSM010190.0047181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-16279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-16481IPR015300DNA-binding pseudobarrel domain
PfamPF023629.3E-15482IPR003340B3 DNA binding domain
CDDcd100171.14E-13481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MQNIPASFGY KYMKSGQKFE KTATLQTDGK SWPVIVHSTD RLKFRKGWCK FVRDNNVHVG  60
DVLCFELIDE DNFILKVRIR RA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361149.13e-36PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLM1A5E63e-35M1A5E6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000150795e-36(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-12related to vernalization1 1