PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g22770
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 118aa    MW: 13809.9 Da    PI: 8.1832
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g22770genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331.1e-10271021599
                 -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  l++p +f++ + g ++  s  l +e ++ r W++          +++++GW +F ++n+L+  Df+ F++ ++  f  +vk+f k
  CA06g22770  27 KLRIPSSFLKYFnGDIPVVS-LLEVEGPTRRAWRIGE-------DFFFEGGWPKFMRDNNLEFEDFLNFSYARKCIF--NVKIFGK 102
                 48899999955564444443.7788888888887766.......79*************************987888..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-1711104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-1513104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-913100No hitNo description
SMARTSM010191.2E-715103IPR003340B3 DNA binding domain
PfamPF023621.6E-827102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MRTEKNYVGA GFPAFIKVYR PENCYPKLRI PSSFLKYFNG DIPVVSLLEV EGPTRRAWRI  60
GEDFFFEGGW PKFMRDNNLE FEDFLNFSYA RKCIFNVKIF GKNGYLKHDL TGMEELE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077977.12e-50B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_015077978.11e-50B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A2G2ZDH43e-60A0A2G2ZDH4_CAPAN; Uncharacterized protein
STRINGSolyc06g074160.1.13e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.14e-12B3 family protein