PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g23010
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 345aa    MW: 39265.3 Da    PI: 8.2511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g23010genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.2e-06180199120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 + C++C+k+F+r  n++ H+
  CA06g23010 180 FACNICNKTFNRYNNMQMHM 199
                 78*****************9 PP
2zf-C2H216.62.1e-05264286123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +Cgk+F  k + ++H +++
  CA06g23010 264 FSCRKCGKTFAVKGDWRTHEKNC 286
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-5171203No hitNo description
SMARTSM003550.095180202IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-4180199IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.783180207IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5180199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SMARTSM00355230227259IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.91E-5250284No hitNo description
Gene3DG3DSA:3.30.160.602.3E-4251284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035532264284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808264284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGIRNINFHV HHQDMDVCFQ APNNFIEWLK PSSNNSSLSP SPSSSSSSSS ILINHEPTNP  60
MTTFLKLPLL HNPSQQVEEN IYNINQTIQC LPLLSKLTDP KTEKKEEDYQ VKEENMEKVK  120
VSLHIGLPDV DEAKPFNFNK EEENKEKNTS TIINKGCNFN SESRFWIPTP AQILVGPMQF  180
ACNICNKTFN RYNNMQMHMW GHGSEYRKGP ESLRGTQPAA MLRLPCYCCA HGCKNNINHP  240
RAKPLKDFRT LQTHYKRKHG AKAFSCRKCG KTFAVKGDWR THEKNCGKLW YCTCGSDFKH  300
KRSLKDHIRS FGKGHSPLDG FEDNCKEYCV STGGSSDDDD DEVN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-155HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577931.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-118ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2G2ZDE00.0A0A2G2ZDE0_CAPAN; Zinc finger protein WIP3
STRINGPGSC0003DMT4000183081e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-114WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]