PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g23650

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 204aa MW: 22527.5 Da PI: 7.3688

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g23650	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.2	5e-42	39	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++ CA06g23650 39 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARMRDPVYGSAGAICQLQKQVNELQAQLAKTQA 137 7***********************************************************************************************998 PP DUF260 100 e 100 e CA06g23650 138 E 138 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.954	38	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-42	39	136	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MESSNTTINS LITTTTPPSP DSVSPPRNSP SPPRVVVTPC AACKILRRRC AEKCVLAPYF 60 PPNDPIKFTT AHRVFGASNI IKFLQELPEY QRADAVSSMV YEANARMRDP VYGSAGAICQ 120 LQKQVNELQA QLAKTQAELV TMQCQHANLM AYVYVEMGQS PPTSPQQSLD KFTNSTTHST 180 FHNNINFLDE NNNYGTLLET LWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-41	38	144	10	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-41	38	144	10	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-126	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577623.1	1e-151	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9SK08	1e-68	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1U8H951	1e-150	A0A1U8H951_CAPAN; LOB domain-containing protein 1
TrEMBL	A0A2G2ZDM5	1e-150	A0A2G2ZDM5_CAPAN; LOB domain-containing protein 1-like
TrEMBL	A0A2G3CB06	1e-150	A0A2G3CB06_CAPCH; LOB domain-containing protein 1
STRING	PGSC0003DMT400019410	1e-118	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	4e-65	LOB domain-containing protein 11