PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g24690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 737aa    MW: 80947.1 Da    PI: 9.2925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g24690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07637686147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       CA06g24690 637 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 686
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.876632691IPR017930Myb domain
SMARTSM007172.0E-7636689IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10637687IPR009057Homeodomain-like
CDDcd116602.21E-17638688No hitNo description
SuperFamilySSF466891.44E-15638719IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPHIP RATRSARRRG INRRKADGDG TCPFDLLATV AGKLLGEEGE  60
SSPDSTGSVR GKEQGAIVKG EKVKEDEDRS LKEKSYTEGC YERGFFISEL VSQAPVVNRS  120
LSELPHVQND TISGPASVTM SSDCAEKFPF AKQFVNGESS GQNGNISSKT EREASGCGVF  180
SSCTLDTESD KQMKIELSNS AKVSTYKEAA ISSSKFPDIW DKKPSTLVTS DESVKLSLST  240
YPAPCKSFPL IRNDVKLAKK DDDENSGCTQ PSTPNKASGS APRVRDQPIK KLLASKYREE  300
NLKSDDEGHA NSGRKTMHVY YNRNIDYKHQ RSQRDFPFKK RKVFKCGSLS NSDKEMSTDG  360
ICSSPTDDLH GIASSSSKAS SGGCTAAGTS VFNGGRAILR PGDSHVKFRI KSFRVPELFV  420
DIPENATIGS LKACESIVFK YLSSFSIGCY HQYSSTVDFL FITIHASNIL QRTVMEAVTA  480
ILGGGLRIGL VFQGKKVRDD NKTLLQTGIS HDYKLDALGF SLEPNPVQTS QPLGADCRSC  540
VLPYETPQPL TSRCPSPGTV VHTGIQQGRS DDHTGTSLSN FLESDHDSAP SPHYAALEKI  600
SANSRALVPL TAVNAEALSV VPLRKPKRSE ATQRRIRRPF SVAEVEALVQ AVEKLGTGRW  660
RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV LTAHAYWSQQ  720
QAKQQMKQPS ETYLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-556247274107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332341QRDFPFKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577767.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016577768.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A1U8H2S40.0A0A1U8H2S4_CAPAN; telomere repeat-binding protein 5-like isoform X1
STRINGPGSC0003DMT4000779690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-126TRF-like 2