PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g25900
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 465aa    MW: 51932.1 Da    PI: 8.4509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g25900genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.5e-09415462347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W++ E++ l  +v+++G g+Wk I        ++R   ++k++w++ 
       CA06g25900 415 KWSALEEDTLRTGVQKYGIGNWKVILDAYRdifTTRQSGDLKDKWRNM 462
                      8*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.209408464IPR017930Myb domain
SuperFamilySSF466891.33E-13410463IPR009057Homeodomain-like
CDDcd116608.21E-16414463No hitNo description
PfamPF002498.6E-7415462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-10415463IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGIDTHISQW ILEFILRQPL DDNILNDLIN VLPLPNDNLN LKKALLVRKI ESEIANGSVT  60
EKILELMELI EELDHQEGII RDSVATKAAY CAVAVECTVK FLKSERAGSD KGKYFEAVRR  120
IWKRRIDLIE KVENVGVVSE ELWSWRDEIE AAFWEDRCAE NVIRRSKGVF AVDAVKAFVR  180
EAKERIGAPF LEVVAETYHT DEAVKSVFGE VNKGGASKKN GKEVCKGNAL PRKKHVAFKR  240
TRGASGIRIS DSIESEVEAS GGQDDSSAEV KIAKKALKLS SLELRAMVKD PLPDALRFAE  300
TLSSVVRDNM GHQPAENNSD MAPQPMVSSS RMAQAGGENR EAQQNCHHAA ASKPDLANRS  360
SAAHTFEWDS FLDDINEGSP SGVNRVTLPS PKRTKVSPLK KYEFKKITTR RKPVKWSALE  420
EDTLRTGVQK YGIGNWKVIL DAYRDIFTTR QSGDLKDKWR NMIS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577606.10.0PREDICTED: telomeric repeat-binding factor 2-like
TrEMBLA0A1U8H2990.0A0A1U8H299_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZEE30.0A0A2G2ZEE3_CAPAN; telomeric repeat-binding factor 2-like
STRINGPGSC0003DMT4000781280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-18TRF-like 5