PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g26100

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 193aa MW: 21702.7 Da PI: 6.6671

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g26100	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.2	5.7e-38	13	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+kdC++ p+fp+++p+kf +vh++FGasn++k+l++ p ++reda+ s+vyeA ar+rdPvyG+vg+i++lq+++ +l++el+++ CA06g26100 13 PCAACKLLRRRCTKDCIFLPHFPSAEPHKFIAVHRIFGASNISKMLQQEiPMNNREDAVVSMVYEATARLRDPVYGSVGIISALQKHIFHLQSELNEAS 111 7*******************************************87648888***************************************9987 PP DUF260 99 ee 100 +e CA06g26100 112 AE 113 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.971	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-39	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSCTLSKKNK HMPCAACKLL RRRCTKDCIF LPHFPSAEPH KFIAVHRIFG ASNISKMLQQ 60 EIPMNNREDA VVSMVYEATA RLRDPVYGSV GIISALQKHI FHLQSELNEA SAEAMSLRTQ 120 LSDASSLPSS LLEGSPFTPE NHEFHDHYQK PNEQHAYANN DSNDLLLLPE AADYCFQETE 180 VLPLPYLKYG QQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-39	13	131	11	126	LOB family transfactor Ramosa2.1
5ly0_B	9e-39	13	131	11	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-106	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027773898.1	1e-107	LOB domain-containing protein 25-like
Swissprot	Q8LBW3	3e-42	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2G3CBT6	1e-138	A0A2G3CBT6_CAPCH; LOB domain-containing protein 4
STRING	Solyc06g082770.2.1	1e-105	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-44	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]