PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g26450

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 369aa MW: 40767.9 Da PI: 8.6594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g26450	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	290	337	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq CA06g26450 290 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 337 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.84E-17	284	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.65E-9	284	341	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-16	286	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.396	286	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	290	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-10	292	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDNDHFSNFG LHFEPKIPLN TVHSPQELNT DYFMNTHLDS NNSIDHQYAH FDSALSSVVS 60 SPIPSNSLSS LRELIGKLGS ICSSPPAAFS NFTGVSCYST PLNSPPKLLH MPIMNQMGKD 120 TPFSCFGSRS FNDRTSQFER YGSGTAGRGN LTRILSSPCL VQNKSSGIMC EGLNLGKISG 180 TNEECSVSEQ TQTRNVLDSR KRKAVSKLKT KNNVATVDGN GENENEDGKR EKRAKSTEGN 240 MGNNGIVKME EQKGSGDNGA EKEAKEKQKI TEPPKDYIHV RARRGQATDS HSLAERVRRE 300 KISQRMKLLQ DLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLASV NPRMDFHIDN 360 LLHKEVSV*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDNDHFSNFG LHFEPKIPLN TVHSPQELNT DYFMNTHLDS NNSIDHQYAH FDSALSSVVS  60
SPIPSNSLSS LRELIGKLGS ICSSPPAAFS NFTGVSCYST PLNSPPKLLH MPIMNQMGKD  120
TPFSCFGSRS FNDRTSQFER YGSGTAGRGN LTRILSSPCL VQNKSSGIMC EGLNLGKISG  180
TNEECSVSEQ TQTRNVLDSR KRKAVSKLKT KNNVATVDGN GENENEDGKR EKRAKSTEGN  240
MGNNGIVKME EQKGSGDNGA EKEAKEKQKI TEPPKDYIHV RARRGQATDS HSLAERVRRE  300
KISQRMKLLQ DLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLASV NPRMDFHIDN  360
LLHKEVSV*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-58	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577542.1	0.0	PREDICTED: transcription factor bHLH78-like
Swissprot	Q9SRT2	7e-72	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A2G2ZE78	0.0	A0A2G2ZE78_CAPAN; Transcription factor bHLH49
STRING	PGSC0003DMT400051980	1e-168	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	6e-67	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]