PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g28250
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 630aa    MW: 71497.4 Da    PI: 6.1227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g28250genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.96.1e-21493589295
                 EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                 +kvl++sdv+++gr+vlpk+ ae+h   ++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +FvkangL+egDf+v++   + +++++++
  CA06g28250 493 QKVLKQSDVNNLGRIVLPKREAERHlpHLETRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIYA--DmKCGKYLI 588
                 79*************************999999********7778*******99777777777777.********************5..448887776 PP

                 E CS
          B3  95 k 95 
                 +
  CA06g28250 589 R 589
                 6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-27486594IPR015300DNA-binding pseudobarrel domain
CDDcd100152.57E-33490591No hitNo description
SuperFamilySSF1019361.08E-22491584IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-19492594IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757492594IPR003340B3 DNA binding domain
PfamPF023623.1E-17493588IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MDRKLHELHG NTNNQDENIN MVQSADDDIQ MLQQQPTDFD PMEDTDIWLN ENFSTDFTSL  60
QDFPCMSSSS STSYSPPTEL SDPSSGVVLK SDAEQDFDKK IDTIGDQECL NVMENLEYMD  120
LIDVNEFLDP MISFLHSENQ NPQEQQQQEL VVKEKGKVPL EDDQQVSIFQ GDSELALMFF  180
EWLKHNKDYI SAEDMRSIKL KRSTIESASR RLGSNKEGKK QLLRLILDWV EQHRLQKKQM  240
TEAQAINQQC LQNCAPCNFD PNACFYPPQW MANPAYNAPF PEPMQGYIGD AYCNGSYFAT  300
PLNHTVNGGV SSPLSAEYQP MDTSQSWSPS QFTMATASQY NQFPENDGTN NVAMADQSQS  360
LLSTQYDPYQ IFDGNGEALP RLGSCATREA RKNRMARQRR VRPHHYRHQN RNQRQISNEK  420
SVMMGGEINN CAMTQANNPG NWVCWPSPPM VMVPQPLPLE RPAVQTPQSH QKNGSADKKQ  480
AIKTEKNLKF LLQKVLKQSD VNNLGRIVLP KREAERHLPH LETRDGISIA MEDIGTSRVW  540
NMKYRFWPNN KSRMYLLENT GDFVKANGLQ EGDFIVIYAD MKCGKYLIRG VKVRPNGPKL  600
EGKKQAKKNL RKLSSAAAIS SSPVAQAVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A8e-374885921105B3 domain-containing transcription factor FUS3
6j9b_D8e-374885921105B3 domain-containing transcription factor FUS3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-127HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577482.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X2
TrEMBLA0A1U8H1Z40.0A0A1U8H1Z4_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZEH20.0A0A2G2ZEH2_CAPAN; B3 domain-containing transcription factor ABI3-like isoform X2
STRINGSolyc06g083600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-115B3 family protein