PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g02200
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 436aa    MW: 47812.7 Da    PI: 7.0413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g02200genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-082572951255
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  CA07g02200 257 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 295
                 9*****************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.522245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-7256300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6257295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-12257305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-9257299No hitNo description
Gene3DG3DSA:4.10.280.101.6E-12258303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGILFFLNSL IYFFCXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXAAAAAK  180
ALMLQQQQLL LSRTLAGNGD NDGGVSFYYL IVNGSSVQAL FNGFTGSLGQ TSNQSHHFHL  240
PQGGAMNSQS FGAPVLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV  300
LSMSRLGGAA AVAPLVADMS SEGGRGNGNG NVTASSSNND TMTVTEHQVA KLMEEDMGSA  360
MQYLQGKGLC LMPISLATAI STATCHSRNP PMIPNGVNNT NGGGGPTSPS LSALTVQSAT  420
LVGNAVKDST SVSEA*
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4442222e-88DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579814.11e-138PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG95e-74BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2G2WAQ81e-141A0A2G2WAQ8_CAPBA; Transcription factor bHLH66
STRINGXP_008242964.11e-101(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-65LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]