PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g02810
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TALE
Protein Properties Length: 414aa    MW: 46358.9 Da    PI: 6.0816
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g02810genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.6e-083623952154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  CA07g02810 362 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 395
                 469*****************************87 PP
2ELK28.92.7e-10316337122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  CA07g02810 316 ELKHELKQGYKEKIVDIREEIL 337
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-19150194IPR005540KNOX1
PfamPF037903.7E-17152193IPR005540KNOX1
SMARTSM012566.4E-25203259IPR005541KNOX2
PfamPF037911.2E-18209258IPR005541KNOX2
PROSITE profilePS512139.969316336IPR005539ELK domain
SMARTSM011886.1E-4316337IPR005539ELK domain
PfamPF037899.5E-7316337IPR005539ELK domain
PROSITE profilePS5007111.726336399IPR001356Homeobox domain
SMARTSM003894.7E-11338403IPR001356Homeobox domain
SuperFamilySSF466894.28E-16338402IPR009057Homeodomain-like
CDDcd000868.24E-11339400No hitNo description
Gene3DG3DSA:1.10.10.602.9E-25343400IPR009057Homeodomain-like
PfamPF059201.1E-17356395IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEFQDHFSQE IALHHHQQQQ QQQQHPNVTV LRSMLPNESP DNNNNNNNNN KLQPTWLNTS  60
LLRQQHFAAA AAAAASSPSG GGNNNNNNFL HLQTSNSDSS NSNQWLSPTG GELSKMNQAA  120
AGGGGGEDSN NINNSNTNNN NEEEHSWERE KCKADILNHP LYDQLLSAHV SCLRIATPVD  180
QLPRIDAQLA QSQNVVAKYS VLGQGQPPLD DKDLDQFMTH YVLLLSSFKE QLQQHVRVHA  240
MEAVMACWEL EQSLQSLTGV APGEGTGATM SDDDDDQADS DTNFLDGGFD GPDSMGFGPL  300
VPTESERSLM ERVRQELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT SVLKAWWQSH  360
SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSTSSSQKSK RKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392412RKRNWHSNPSTSSSQKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776890.0KJ477689.1 Solanum tuberosum class II knox protein (HOX1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579860.10.0PREDICTED: homeobox protein knotted-1-like LET12
SwissprotO223000.0LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A1U8H9440.0A0A1U8H944_CAPAN; Homeobox protein knotted-1-like 3
TrEMBLA0A2G2Z0N60.0A0A2G2Z0N6_CAPAN; homeobox protein knotted-1-like LET12
STRINGXP_009770424.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-150KNOTTED1-like homeobox gene 3