PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g04270

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

YABBY

Protein Properties

Length: 195aa MW: 21808.8 Da PI: 8.0668

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g04270	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	218.9	1.6e-67	6	166	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslk..eelleelkveeenlksnvekeesastsvssek 100 + +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q +++s +++ + ++ + e +++ + ++ ++++ ++ CA07g04270 6 DVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSSSTSSWQNHQAQvpNHTAPEYRMDFGSSTKCTMNR------MT--- 95 5689****************************************999887766666422222200222222222222222222222......11... PP YABBY 101 lsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++ + + v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl CA07g04270 96 MRTPITSNIHHEERiVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 166 22233333333333389**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.0E-71	8	166	IPR006780	YABBY protein
SuperFamily	SSF47095	3.93E-8	108	159	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.5E-4	114	160	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MASCIDVASE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSSS 60 TSSWQNHQAQ VPNHTAPEYR MDFGSSTKCT MNRMTMRTPI TSNIHHEERI VNRPPEKRQR 120 VPSAYNQFIK EEIQRIKANN PDISHREAFS TAAKNWAHFP HIHFGLMLES NNQAKLACGN 180 ASTTQAIYIC INLC*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	0.0	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016579962.1	1e-133	PREDICTED: axial regulator YABBY 5-like isoform X3
Swissprot	Q8GW46	5e-85	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1U8H955	1e-131	A0A1U8H955_CAPAN; axial regulator YABBY 5-like isoform X3
STRING	PGSC0003DMT400079392	1e-118	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-87	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]